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Global Food and Agricultural Technology Laboratory
Graduate School of Engineering
All Publications
2026
Husni, M.F.A., Trianti, I., Yusnawan, E., Pamungkas, B.A. et al. (2026) ‘In vitro assessment of endophytic bacteria originating from Cycas rumphii and Dioon spinulosum as stress-tolerant plant growth-promoting bacteria’, AGRIVITA Journal of Agricultural Science.
Mayosa, S.Y., Hibatullah, A.Y., Asritafriha, L. et al. (2026) ‘Modification of starch–ammonium sulfate concentration to enhance the antibacterial activity of marine Streptomyces aureofaciens A3’, Current Microbiology.
Putri, S.P. (2026) Gas Chromatography–Mass Spectrometry. Springer.
2025
Ati, A.G., Sari, I.A., Firmanto, H., Malik, A., Fukusaki, E. et al. (2025) ‘Effect of pre-drying on flavor modulation in Indonesian cocoa beans: A metabolomics study of key flavor compounds and sensory profiles’, Food Bioscience.
Ati, A.G., Sari, I.A., Firmanto, H., Malik, A., Fukusaki, E. et al. (2025) ‘Metabolomics reveals the impact of different de-pulping methods on flavor modulation and their potential quality markers in Indonesian cocoa beans’, Food Bioscience.
Adan, M.F., Muhammad, D.R.A. et al. (2025) ‘Metabolite and sensory profiling of microwave-assisted and ultrasonic-assisted alkalized cocoa powders’, Journal of Food Science.
Afifah, E.N., Sari, I.A., Susilo, A.W., Firmanto, H., Malik, A. et al. (2025) ‘Correlation between sensory attributes and metabolomic profiles of cocoa liquor from different cacao genotypes’, Food Chemistry: X.
Astawan, M., Tryas, A.A., Saraswati, S., Wresdiyati, T. et al. (2025) ‘Metabolite profiling of bioactive compounds in tempe flour and its potential as a hypocholesterolemic functional food’, Frontiers in Nutrition.
Dwivany, F.M., Fauziah, T., Yamamoto, K. et al. (2025) ‘Chitosan coating to delay the ripening process in banana: A transcriptomics study’, Horticulture, Environment, and Biotechnology.
Novianti, C., Sari, L.D.N., Nugrahapraja, H. et al. (2025) ‘Metabolic profiling reveals distinctive ripening dynamics in ethylene-treated Musa balbisiana cv. “Pisang Klutuk Wulung” compared to commercial Cavendish banana’, Journal of Bioscience and Bioengineering.
Putri, D.Y., Yueniwati, Y., Utami, S., Syaban, M.F.R. et al. (2025) ‘Salacca zalacca skin as a potential adjuvant for metabolic syndrome therapy: Integrative in vitro and computational approaches’, Trends in Sciences.
Ramdhani, R.P., Tryas, A.A., Astawan, M. et al. (2025) ‘Comparative metabolomic analysis of tempe from velvet bean, soybean, and their combination’, Current Research in Food Science.
Riyanto, R.A., Fukusaki, E. et al. (2025) ‘Microbial intervention in the soaking step during tempeh preparation to modulate B vitamin contents: A metabolomics approach’, Preventive Nutrition and Food Science.
Srikandace, Y., Kamarisima, K., Putri, S.P. and Aditiawati, P. (2025) ‘Optimization of medium components for enhancing antibacterial activity of marine Streptomyces aureofaciens A3 through response surface methodology’, Trends in Sciences.
Wahyuni, D.K., Wacharasindhu, S., Bankeeree, W. et al. (2025) ‘Biotransformation of medicarpin from homopterocarpin by Aspergillus niger and its biological characterization’, Scientific Reports.
Yunindanova, M.B., Novarianto, H., Fukusaki, E. et al. (2025) ‘Metabolites and nutritional variations of phenotypic diversity in Kopyor coconut (Cocos nucifera L. var. Kopyor)’, Journal of Bioscience and Bioengineering.
2024
Afifah, E.N., Sari, I.A., Susilo, A.W., Malik, A. and Fukusaki, E. et al. (2024) ‘Characterization of fine-flavor cocoa in parent-hybrid combinations using metabolomics approach’, Food Chemistry: X.
Yunindanova, M.B., Putri, S.P., Novarianto, H. et al. (2024) ‘Characteristics of kopyor coconut (Cocos nucifera L.) using sensory analysis and metabolomics-based approach’, Journal of Bioscience and Bioengineering.
Rahmawati, D., Adan, M.F.Y., Ikram, M.M.M., Iman, M.N. et al. (2024) ‘Effect of sodium metabisulfite treatment and storage condition on metabolic profile of young coconut (Cocos nucifera L.)’, Journal of Bioscience and Bioengineering.
Riyanto, R.A., Fukusaki, E. and Putri, S.P. (2024) ‘Metabolite profiling highlights the effect of microbial intervention in the soaking step of tempe’, International Journal of Food Science and Technology.
Muhammad, D.R.A., Pratama, D., Praseptiangga, D. et al. (2024) ‘Improvement of cocoa powder properties through ultrasonic- and microwave-assisted alkalization’, Open Agriculture.
Afifah, E.N. and Putri, S.P. (2024) ‘Food metabolomics for improvement of nutrition and well-being’, BIO Web of Conferences.
Yunindanova, M.B. and Putri, S.P. (2024) ‘Metabolomics application for food quality improvement and reduction of food loss’, AIP Conference Proceedings.
Aji, M.D.R., Dion, P., Danar, P., Setyaningrum, A. et al. (2024) ‘Improvement of cocoa powder properties through ultrasonic- and microwave-assisted alkalization’, Open Agriculture.
2023
Prativi, MBN, Astuti, DI, Putri, SP, Laviña, WA, Fukusaki, E, et al. 2023, ‘Metabolite Changes in Indonesian Tempe Production from Raw Soybeans to Over-Fermented Tempe’, Metabolites.
Amalia, F, Irifune, T, Takegami, T, Yusianto, Sumirat, U, et al. 2023, ‘Identification of potential quality markers in Indonesia’s Arabica specialty coffee using GC/MS-based metabolomics approach’, Metabolomics.
Heryanto, R, Putra, CA, Khalil, M, Rafi, M, Putri, SP, et al. 2023, ‘Antioxidant Activity and Metabolite Profiling of Xylocarpus granatum Extracts Using Gas Chromatography–Mass Spectrometry’, Metabolites.
Iman, MN, Irdiani, R, Rahmawati, D, Fukusaki, E, et al. 2023, ‘Improvement of the functional value of green soybean (edamame) using germination and tempe fermentation: A comparative metabolomics study’, Journal of Bioscience and Bioengineering.
Ikram, MMM, Putri, SP, Fukusaki, E 2023, ‘Chitosan-based coating enriched with melezitose alters primary metabolites in fresh-cut pineapple during storage’, Journal of Bioscience and Bioengineering.
Wada, K, Uebayashi, K, Toya, Y, Putri, SP, et al. 2023, ‘Effects of n-butanol production on metabolism and the photosystem in Synechococcus elongatus PCC 7942 based on metabolic flux and target proteome analyses’, The Journal of General and Applied Microbiology.
Putri, SP 2023, ‘Metabolomics as a Tool for Phenotypic Characterization and Strain Improvement’, Detection and Analysis of Microorganisms by Mass Spectrometry.
Iman, MN, Riyanto, RA, Putri, SP 2023, ‘Metabolomics as a Tool for Phenotypic Characterization and Strain Improvement’, RSC Books.
Putri, SP 2023, ‘Novel applications of metabolomics for metabolic engineering and food technology’, CABI Digital Library.
Putri, SP 2023, ‘Mass spectrometry based metabolomics for quality improvement of high value food products’, Annals of Nutrition and Metabolism
2022
Putri, SP, Ikram, MMM, Sato, A, Dahlan, HA, et al. 2022, ‘Application of gas chromatography-mass spectrometry-based metabolomics in food science and technology’, Journal of Bioscience and Bioengineering.
Helmi, H, Astuti, DI, Putri, SP, Sato, A, Laviña, WA, et al. 2022, ‘Dynamic changes in the bacterial community and metabolic profile during fermentation of low-salt shrimp paste (terasi)’, Metabolites, vol. 12, no. 2, p. 118.
Parijadi, AAR, Yamamoto, K, Ikram, MMM, et al. 2022, ‘Metabolome analysis of banana (Musa acuminata) treated with chitosan coating and low temperature reveals different mechanisms modulating fruit quality’, Frontiers in Sustainable Food Systems.
Hanifah, A, Firmanto, H, Putri, SP & Fukusaki, E 2022, ‘Unique metabolite profiles of Indonesian cocoa beans from different origins and their correlation with temperature’, Journal of Bioscience and Bioengineering.
Kitani, Y, Putri, SP & Fukusaki, E 2022, ‘Investigation of the effect of processing on the component changes of single-origin chocolate during the bean-to-bar process’, Journal of Bioscience and Bioengineering.
Rafi, M, Karomah, AH, Septaningsih, DA, et al. 2022, ‘LC-MS/MS based metabolite profiling and lipase enzyme inhibitory activity of Kaempferia angustifolia Rosc. with different extracting solvents’, Arabian Journal of Chemistry.
Batubara, I, Husna, S, Rafi, M, Sumaryada, T, et al. 2022, ‘A combination of UV-Vis spectroscopy and chemometrics for detection of sappanwood (Caesalpinia sappan) adulteration from three dyes’, Sains Malaysiana.
Dahlan, HA, Nambu, Y, Putri, SP & Fukusaki, E 2022, ‘Effects of soaking tempe in vinegar on metabolome and sensory profiles’, Metabolites, vol. 12, no. 1, p. 30.
Pitchapa, R, Dissook, S, Putri, SP, Fukusaki, E & Shimma, S 2022, ‘MALDI mass spectrometry imaging reveals the existence of an N-acyl-homoserine lactone quorum sensing system in Pseudomonas putida biofilms’, Metabolites, vol. 12, no. 11, p. 1148.
Putri, SLE, Suantika, G, Situmorang, ML, Putri, SP, et al. 2022, ‘Metabolomics approach to elucidate the importance of count size in commercial penaeid shrimps: white leg shrimp (Litopenaeus vannamei) and black tiger shrimp’, Journal of Bioscience and Bioengineering.
Sato, A, Putri, SP, Astuti, DI & Fukusaki, E 2022, ‘Metabolome analysis to investigate the effect of controlled fermentation on taste-related metabolites in terasi’, Metabolomics.
Iman, MN, Herawati, E, Fukusaki, E, et al. 2022, ‘Metabolomics-driven strain improvement: A mini review’, Frontiers in Molecular Biosciences.
Rafi, M, Nomi, AG, Septaningsih, DA, Heryanto, R, et al. 2022, ‘Quantitative HPLC and FTIR-based metabolomics for clustering Centella asiatica cultivation ages and evaluation of their radical scavenging activity’, Sains Malaysiana.
2021
Amalia, F, Aditiawati, P, Yusianto, Putri, SP & Fukusaki, E 2021, ‘Gas chromatography/mass spectrometry-based metabolite profiling of coffee beans obtained from different altitudes and origins with various postharvest processes’, Metabolomics.
Rahmawati, D, Astawan, M, Putri, SP, et al. 2021, ‘Gas chromatography-mass spectrometry-based metabolite profiling and sensory profile of Indonesian fermented food (tempe) from various legumes’, Journal of Bioscience and Bioengineering.
Ikram, MMM, Mizuno, R, Putri, SP & Fukusaki, E 2021, ‘Comparative metabolomics and sensory evaluation of pineapple (Ananas comosus) reveal the importance of ripening stage compared to cultivar’, Journal of Bioscience and Bioengineering.
Sato, M, Ikram, MMM, Pranamuda, H, Agusta, W, et al. 2021, ‘Characterization of five Indonesian mangoes using gas chromatography–mass spectrometry-based metabolic profiling and sensory evaluation’, Journal of Bioscience and Bioengineering.
Putri, SLE, Suantika, G, Situmorang, ML, Christina, J, et al. 2021, ‘Shrimp count size: GC/MS-based metabolomics approach and quantitative descriptive analysis (QDA) reveal the importance of size in white leg shrimp (Litopenaeus vannamei)’, Metabolomics.
Rafi, M, Nurcahyo, B, Wahyuni, WT, Arif, Z, et al. 2021, ‘Feasibility of UV-Vis spectral fingerprinting combined with chemometrics for rapid detection of Phyllanthus niruri adulteration with Leucaena leucocephala’, Sains Malaysiana.
Suantika, G, Situmorang, ML, et al. 2021, ‘The effect of feed supplementation with fermented red seaweed (Kappaphycus alvarezii) on growth and survival of white shrimp (Litopenaeus vannamei)’, HAYATI Journal of Biosciences.
2020
Ikram, MMM, Ridwani, S, Putri, SP & Fukusaki, E 2020, ‘GC-MS based metabolite profiling to monitor ripening-specific metabolites in pineapple (Ananas comosus)’, Metabolites, vol. 10, no. 4, p. 134.
Heyman, B, Tulke, H, Putri, SP, et al. 2020, ‘Online monitoring of the respiratory quotient reveals metabolic phases during microaerobic 2,3-butanediol production with Bacillus licheniformis’, Engineering in Life Sciences.
Kadar, AD, Astawan, M, Putri, SP & Fukusaki, E 2020, ‘Metabolomics-based study of the effect of raw materials to the end product of tempe—an Indonesian fermented soybean’, Metabolites, vol. 10, no. 9, p. 367.
Suantika, G, Situmorang, ML, Saputra, FI, Putri, SLE, et al. 2020, ‘Metabolite profiling of whiteleg shrimp (*Litopenaeus vannamei*) from super-intensive culture in closed aquaculture systems’, Metabolomics.
Halmschlag, B, Putri, SP, Fukusaki, E, et al. 2020, ‘Poly-γ-glutamic acid production by *Bacillus subtilis* 168 using glucose as the sole carbon source: a metabolomic analysis’, Journal of Bioscience and Bioengineering.
Aditiawati, P, Astuti, DI, Kriswantoro, JA, Khanza, SM, et al. 2020, ‘GC/MS-based metabolic profiling for the evaluation of solid state fermentation to improve quality of Arabica coffee beans’, Metabolomics.
Yamana, T, Taniguchi, M, Nakahara, T, Ito, Y, Okochi, N, et al. 2020, ‘Component profiling of soy-sauce-like seasoning produced from different raw materials’, Metabolites, vol. 10, no. 4, p. 137.
Septiana, S, Yuliana, ND, Bachtiar, BM, Putri, SP, et al. 2020, ‘Metabolomics approach for determining potential metabolites correlated with sensory attributes of *Melaleuca cajuputi* essential oil’, Journal of Bioscience and Bioengineering.
Astawan, M, Rahmawati, IS, Cahyani, AP, et al. 2020, ‘Comparison between the potential of tempe flour made from germinated and non-germinated soybeans in preventing diabetes mellitus’, HAYATI Journal of Biosciences.
Dwivany, FM, Nugrahapraja, H, Fukusaki, E, Putri, SP, et al. 2020, ‘Dataset of Cavendish banana transcriptome in response to chitosan coating application’, Data in Brief.
Fathima, AM, Laviña, WA, Putri, SP & Fukusaki, E 2020, ‘Accumulation of sugars and nucleosides in response to high salt and butanol stress in 1-butanol producing Synechococcus elongatus’, Journal of Bioscience and Bioengineering.
Sato, A, Astuti, DI, Putri, SP & Fukusaki, E 2020, ‘Quality improvement of semi-wet terasi by optimizing the starter culture ratio of controlled fermentation’, HAYATI Journal of Biosciences.
Laviña, WA, Sakurai, SSM, Pontrelli, S, Putri, SP, et al. 2020, ‘Metabolomics analysis reveals global metabolic changes in the evolved *E. coli* strain with improved growth and 1-butanol production in minimal medium’, Metabolites, vol. 10, no. 5, p. 192.
Dissook, S, Putri, SP & Fukusaki, E 2020, ‘Metabolomic analysis of response to nitrogen-limiting conditions in Yarrowia spp.’, Metabolites, vol. 11, no. 1, p. 16.
Noviarni, I, Batubara, I & Putri, SP 2020, ‘Antiglycation and antioxidant activity from methanol extract and fraction of Xylocarpus granatum stem’, Jurnal Kimia Sains dan Aplikasi.
Awards
2024
28th Ando Momofuku Award "Invention Discovery Encouragement Award" - Ando Foundation
2022
Saito Award (Encouragement Award of the Society for Biotechnology, Japan)
2021
President of International Indonesian Scholars Association (I-4)- an official organization of all Indonesian scholars in 9 different regions all over the world. Official partner of Indonesian government to connect with Indonesian global scholar
2020
The President’s Award (award for early career researcher in the field of Metabolomics) – Metabolomics society
Miyata award (encouragement award for early career faculty member in the field of Engineering) - Miyata Foundation, Japan
Secretary General of International Indonesian Scholars Association (I-4)- an official organization of all Indonesian scholars in 9 different regions all over the world. Official partner of Indonesian government to connect with Indonesian global scholar
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